PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_3ECFD7555.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 65aa    MW: 7719.79 Da    PI: 4.4945
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_3ECFD7555.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.16.6e-092564140
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                           +f n+YA e GFsvrk + +  + n +i+ r++vCs+eg 
  Traes_3DL_3ECFD7555.1 25 EFCNKYALEKGFSVRKGYVEWDEANVKIILRKLVCSREGC 64
                           5889**********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-62564IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
VSDECMAEYD DIVIRMFDRE EEGFEFCNKY ALEKGFSVRK GYVEWDEANV KIILRKLVCS  60
REGCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.25e-22PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014751141.15e-22PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5D9B31e-40W5D9B3_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.12e-21(Brachypodium distachyon)
STRINGBRADI4G11630.17e-22(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]